| Player | Reason | From | Until | Days | Games missed |
|---|---|---|---|---|---|
| Luca Vozar | ILL | 30 Oct 2026 | Current | — | 1 |
 Janik Bachmann | Hip Injury | 28 Oct 2026 | Current | — | 2 |
 Robin Gosens | Head Injury | 24 Oct 2026 | Current | — | 3 |
 Soufiane El-Faouzi | Nasal Bone Fracture | 24 Oct 2026 | Current | — | 3 |
| Adrian Gantenbein | Muscular Problems | 24 Oct 2026 | Current | — | 3 |
 Dejan Ljubicic | Knee Injury | 23 Oct 2026 | — | — | 0 |
| Dejan Ljubicic | Fitness | 23 Oct 2026 | 27 Oct 2026 | 4 | 1 |
 Kenan Karaman | Muscular Problems | 22 Oct 2026 | 26 Oct 2026 | 4 | 1 |
| Ron Schallenberg | Leg Injury | 20 Oct 2026 | Current | — | 3 |
 Maximilian Wöber | Thigh Muscle Strain | 20 Oct 2026 | Current | 72 | 3 |
 Moussa Sylla | Leg Injury | 12 Oct 2026 | — | — | 0 |
| Moussa Sylla | Leg Injury | 12 Oct 2026 | Current | — | 4 |
| Moussa Sylla | Leg Injury | 11 Oct 2026 | — | — | 1 |
| Johannes Siebeking | Injury To Abdominal Muscles | 15 Sept 2026 | Current | — | 8 |
| Dejan Ljubicic | Knee Injury | 14 Sept 2026 | 22 Oct 2026 | 38 | 5 |
| Kenan Karaman | Hip Injury | 9 Aug 2026 | 4 Sept 2026 | 26 | 3 |
 Bryan Lasme | Muscle Injury | 8 Aug 2026 | 7 Sept 2026 | 30 | 5 |
| Adrian Gantenbein | Ankle Injury | 25 Jul 2026 | 8 Sept 2026 | 45 | 6 |
Unknown player | Knock | 4 May 2026 | 19 May 2026 | 15 | 2 |
 Hasan Kuruçay | Ankle Injury | 3 May 2026 | 14 May 2026 | 11 | 1 |
Unknown player | Hamstring Injury | 24 Apr 2026 | 14 May 2026 | 20 | 3 |
Unknown player | Knock | 20 Apr 2026 | 29 Apr 2026 | 9 | 1 |
Unknown player | Hamstring Injury | 18 Apr 2026 | 14 May 2026 | 26 | 4 |
 Nikola Katic | Knee Injury | 4 Apr 2026 | 14 May 2026 | 40 | 6 |
 Edin Džeko | Shoulder Injury | 1 Apr 2026 | 30 Apr 2026 | 29 | 4 |
Unknown player | Hamstring Injury | 14 Mar 2026 | 15 Apr 2026 | 32 | 5 |
Unknown player | Dislocation Fracture Of The Ankle Joint | 14 Mar 2026 | 30 Jun 2026 | 108 | 10 |
 Finn Porath | Hamstring Injury | 1 Mar 2026 | 3 May 2026 | 63 | 9 |
| Moussa Sylla | Adductor Pain | 27 Feb 2026 | 2 Mar 2026 | 3 | 1 |
 Loris Karius | Back Problems | 20 Feb 2026 | 10 Mar 2026 | 18 | 3 |
Unknown player | Cruciate Ligament Tear | 8 Feb 2026 | 26 Oct 2026 | 260 | 14 |
Unknown player | Ankle Ligament Tear | 25 Jan 2026 | 28 Feb 2026 | 34 | 5 |
Unknown player | Ankle Injury | 22 Jan 2026 | 11 Apr 2026 | 79 | 11 |
| Adrian Gantenbein | Calf Injury | 20 Jan 2026 | 25 Mar 2026 | 64 | 9 |
| Vitalie Becker | Knee Problems | 17 Jan 2026 | 8 Apr 2026 | 81 | 12 |
Unknown player | Cruciate Ligament Tear | 10 Jan 2026 | — | — | 37 |
Unknown player | Achilles Tendon Problems | 21 Dec 2025 | 29 Mar 2026 | 98 | 13 |
| Janik Bachmann | Heel Injury | 12 Dec 2025 | 8 Feb 2026 | 58 | 6 |
| Bryan Lasme | Inner Ligament Injury | 10 Dec 2025 | 29 Mar 2026 | 109 | 14 |
Unknown player | Cruciate Ligament Tear | 6 Dec 2025 | 30 Jun 2026 | 206 | 21 |
Unknown player | Metatarsal Fracture | 5 Dec 2025 | 28 Jan 2026 | 54 | 6 |
| Adrian Gantenbein | Calf Injury | 26 Nov 2025 | 5 Jan 2026 | 40 | 4 |
Unknown player | Ankle Injury | 13 Nov 2025 | 20 Jan 2026 | 68 | 7 |
Unknown player | Torn Muscle Fiber | 8 Nov 2025 | 1 Jan 2026 | 54 | 6 |
Unknown player | Hamstring Injury | 25 Oct 2025 | 3 Dec 2025 | 39 | 5 |
Unknown player | Muscle Injury | 22 Oct 2025 | 23 Nov 2025 | 32 | 4 |
| Bryan Lasme | Calf Injury | 16 Oct 2025 | 27 Nov 2025 | 42 | 6 |
| Johannes Siebeking | Broken Collarbone | 6 Oct 2025 | 31 Dec 2025 | 86 | 10 |
Unknown player | Hamstring Injury | 2 Oct 2025 | 13 Oct 2025 | 11 | 1 |
 Timo Becker | Internal Ligament Tear | 27 Sept 2025 | 7 Dec 2025 | 71 | 9 |
Emil Højlund | Achilles Tendon Problems | 11 Sept 2025 | — | — | 33 |
Unknown player | Broken Toe | 5 Sept 2025 | 12 Oct 2025 | 37 | 4 |
Unknown player | Ankle Injury | 10 Aug 2025 | 20 Oct 2025 | 71 | 8 |
| Hasan Kuruçay | Fitness | 29 Jul 2025 | 4 Aug 2025 | 6 | 1 |
Unknown player | Knee Surgery | 1 Jul 2025 | 9 Feb 2026 | 223 | 25 |
Unknown player | Fitness | 1 Jul 2025 | 5 Jan 2026 | 188 | 5 |
| Janik Bachmann | Knock | 6 May 2025 | 30 Jun 2025 | 55 | 2 |
Unknown player | Knock | 5 May 2025 | 30 Jun 2025 | 56 | 2 |
Unknown player | Hamstring Injury | 24 Apr 2025 | — | — | 54 |
| Loris Karius | Calf Injury | 31 Mar 2025 | 1 Jun 2025 | 62 | 7 |
Unknown player | Hamstring Injury | 31 Mar 2025 | 20 Apr 2025 | 20 | 2 |
Unknown player | Fitness | 25 Mar 2025 | 6 Apr 2025 | 12 | 1 |
Unknown player | Hamstring Injury | 24 Mar 2025 | 30 Jun 2025 | 98 | 8 |
Unknown player | ILL | 13 Mar 2025 | 6 Apr 2025 | 24 | 3 |
Unknown player | Cruciate Ligament Tear | 24 Feb 2025 | 30 Jun 2025 | 126 | 13 |
Unknown player | Achilles Tendon Problems | 18 Feb 2025 | 24 Mar 2025 | 34 | 5 |
Unknown player | Torn Muscle Fiber | 15 Feb 2025 | 30 Apr 2025 | 74 | 11 |
Unknown player | ILL | 7 Feb 2025 | 10 Feb 2025 | 3 | 0 |
| Moussa Sylla | Torn Muscle Fiber | 7 Feb 2025 | 24 Mar 2025 | 45 | 7 |
Emil Højlund | Hamstring Injury | 17 Jan 2025 | 13 Apr 2025 | 86 | 12 |
Unknown player | Injury | 20 Dec 2024 | 21 Dec 2024 | 1 | 0 |
| Janik Bachmann | Meniscus Injury | 20 Dec 2024 | 26 Jan 2025 | 37 | 4 |
Unknown player | Knee Surgery | 19 Dec 2024 | 2 Feb 2025 | 45 | 5 |
Unknown player | Knee Problems | 13 Dec 2024 | 18 Dec 2024 | 5 | 1 |
Unknown player | Hamstring Injury | 15 Nov 2024 | 12 Jan 2025 | 58 | 7 |
| Moussa Sylla | Injury | 28 Oct 2024 | 4 Nov 2024 | 7 | 2 |
Unknown player | Knock | 27 Oct 2024 | 30 Oct 2024 | 3 | 0 |
| Bryan Lasme | Muscle Injury | 25 Oct 2024 | 25 Nov 2024 | 31 | 5 |
Unknown player | Knee Injury | 21 Oct 2024 | 16 Feb 2025 | 118 | 15 |
Emil Højlund | Achilles Tendon Problems | 16 Oct 2024 | 1 Dec 2024 | 46 | 7 |
| Adrian Gantenbein | Calf Problems | 14 Oct 2024 | 17 Nov 2024 | 34 | 5 |
Unknown player | Hamstring Injury | 8 Oct 2024 | 9 Nov 2024 | 32 | 5 |
Unknown player | Muscular Problems | 29 Sept 2024 | 10 Oct 2024 | 11 | 1 |
| Adrian Gantenbein | Hamstring Injury | 20 Sept 2024 | 7 Oct 2024 | 17 | 3 |
| Janik Bachmann | Knee Injury | 18 Sept 2024 | 15 Oct 2024 | 27 | 4 |
Unknown player | Muscular Problems | 12 Sept 2024 | 12 Oct 2024 | 30 | 4 |
Unknown player | Torn Lateral Ankle Ligament | 4 Sept 2024 | 2 Oct 2024 | 28 | 4 |
Unknown player | Torn Lateral Knee Ligament | 2 Sept 2024 | 30 Jun 2025 | 301 | 36 |
| Vitalie Becker | Calf Injury | 17 Aug 2024 | 18 Jan 2025 | 154 | 21 |
Unknown player | Patellar Tendon Irritation | 16 Aug 2024 | 9 Sept 2024 | 24 | 4 |
Unknown player | ILL | 15 Aug 2024 | 19 Aug 2024 | 4 | 1 |
Emil Højlund | Muscular Problems | 13 Aug 2024 | 19 Aug 2024 | 6 | 1 |
Unknown player | Patellar Tendon Irritation | 4 Aug 2024 | 13 Aug 2024 | 9 | 1 |
Unknown player | Inflammation In The Knee | 29 Jul 2024 | 11 Aug 2024 | 13 | 1 |
| Bryan Lasme | Hamstring Injury | 12 Jul 2024 | 12 Sept 2024 | 62 | 10 |
Unknown player | Knee Injury | 19 May 2024 | 15 Sept 2024 | 119 | 14 |
Unknown player | ILL | 17 May 2024 | 7 Jun 2024 | 21 | 1 |
Unknown player | Knock | 17 May 2024 | 31 May 2024 | 14 | 1 |
Unknown player | Knock | 17 May 2024 | 3 Jul 2024 | 47 | 1 |
 Assan Ouédraogo | Ankle Injury | 14 May 2024 | 30 Jun 2024 | 47 | 1 |
