| Player | Reason | From | Until | Days | Games missed |
|---|---|---|---|---|---|
 Alexander Meyer | ILL | 26 Oct 2026 | Current | — | 2 |
 Ramy Bensebaini | Thigh Problems | 25 Oct 2026 | Current | — | 2 |
 Mathis Albert | Muscular Problems | 24 Oct 2026 | 26 Oct 2026 | 2 | 1 |
 Kauã Prates | Muscle Injury | 23 Oct 2026 | Current | — | 3 |
 Konstantinos Karetsas | Cruciate Ligament Injury | 18 Oct 2026 | 28 Oct 2026 | 10 | 3 |
 Nico Schlotterbeck | Rest | 13 Oct 2026 | 15 Oct 2026 | 2 | 1 |
 Mussa Kaba | Shoulder Injury | 11 Oct 2026 | Current | — | 6 |
 Carney Chukwuemeka | Muscular Problems | 7 Oct 2026 | 12 Oct 2026 | 5 | 1 |
 Julian Ryerson | Bruised Ribs | 2 Oct 2026 | 12 Oct 2026 | 10 | 1 |
| Nico Schlotterbeck | Ankle Injury | 30 Sept 2026 | — | — | 1 |
| Konstantinos Karetsas | Circulation Problems | 9 Sept 2026 | 15 Sept 2026 | 6 | 1 |
| Nico Schlotterbeck | Fitness | 9 Sept 2026 | — | — | 1 |
| Nico Schlotterbeck | Fitness | 9 Sept 2026 | — | — | 0 |
| Konstantinos Karetsas | Circulation Problems | 9 Sept 2026 | — | — | 0 |
 Filippo Mane | Muscle Injury | 6 Sept 2026 | 9 Oct 2026 | 33 | 3 |
 Giannis Konstantelias | Cruciate Ligament Injury | 30 Aug 2026 | Current | — | 12 |
 Justin Lerma | Muscle Injury | 26 Aug 2026 | Current | — | 13 |
| Ramy Bensebaini | Bruised Ribs | 23 Aug 2026 | 9 Sept 2026 | 17 | 3 |
 Enzo dos Santos | Patellar Tendon Problems | 30 Jul 2026 | 12 Sept 2026 | 44 | 8 |
| Nico Schlotterbeck | Inner Ligament Tear In Ankle Joint | 21 Jun 2026 | 9 Sept 2026 | 80 | 10 |
| Ramy Bensebaini | Ankle Injury | 27 Apr 2026 | 28 May 2026 | 31 | 3 |
Unknown player | Knee Injury | 19 Apr 2026 | 5 May 2026 | 16 | 2 |
Unknown player | Knee Problems | 18 Apr 2026 | 28 Apr 2026 | 10 | 2 |
 Karim Adeyemi | Muscular Problems | 14 Apr 2026 | 5 May 2026 | 21 | 3 |
 Yan Couto | Muscular Problems | 10 Apr 2026 | 17 Apr 2026 | 7 | 1 |
 Felix Nmecha | Torn Lateral Knee Ligament | 22 Mar 2026 | 6 May 2026 | 45 | 5 |
| Mussa Kaba | Muscular Problems | 5 Mar 2026 | 12 Sept 2026 | 191 | 10 |
| Mussa Kaba | Knock | 4 Mar 2026 | — | — | 22 |
 Emre Can | Cruciate Ligament Tear | 1 Mar 2026 | Current | — | 30 |
| Carney Chukwuemeka | Muscular Problems | 27 Feb 2026 | 11 Mar 2026 | 12 | 2 |
| Nico Schlotterbeck | Muscular Problems | 15 Feb 2026 | 24 Feb 2026 | 9 | 2 |
Unknown player | Hamstring Strain | 14 Feb 2026 | 6 Mar 2026 | 20 | 4 |
| Yan Couto | ILL | 6 Feb 2026 | 11 Feb 2026 | 5 | 1 |
| Emre Can | Adductor Pain | 5 Feb 2026 | 23 Feb 2026 | 18 | 4 |
| Karim Adeyemi | Ankle Problems | 2 Feb 2026 | 9 Feb 2026 | 7 | 1 |
| Filippo Mane | Muscle Injury | 1 Feb 2026 | 14 Apr 2026 | 72 | 12 |
| Emre Can | ILL | 1 Feb 2026 | 4 Feb 2026 | 3 | 1 |
 Waldemar Anton | ILL | 27 Jan 2026 | 29 Jan 2026 | 2 | 0 |
Unknown player | Back Problems | 23 Jan 2026 | 29 Jan 2026 | 6 | 1 |
| Giannis Konstantelias | ILL | 17 Jan 2026 | — | — | 38 |
 Marcel Sabitzer | Calf Problems | 16 Jan 2026 | 11 Feb 2026 | 26 | 6 |
| Ramy Bensebaini | ILL | 15 Jan 2026 | 19 Jan 2026 | 4 | 1 |
| Mussa Kaba | Ankle Injury | 13 Jan 2026 | 14 Feb 2026 | 32 | 3 |
| Ramy Bensebaini | Rest | 12 Jan 2026 | 14 Jan 2026 | 2 | 0 |
Unknown player | Ankle Problems | 13 Dec 2025 | 15 Dec 2025 | 2 | 0 |
Unknown player | Achilles Tendon Problems | 13 Dec 2025 | 18 Dec 2025 | 5 | 1 |
 Aarón Anselmino | Hamstring Injury | 11 Dec 2025 | 18 Jan 2026 | 38 | 4 |
| Waldemar Anton | Hamstring Injury | 11 Dec 2025 | 3 Jan 2026 | 23 | 2 |
| Marcel Sabitzer | Muscle Stiffness | 9 Dec 2025 | 15 Dec 2025 | 6 | 1 |
Unknown player | Torn Ankle Ligaments | 9 Dec 2025 | 9 Feb 2026 | 62 | 11 |
Unknown player | Torn Muscle Fiber | 7 Dec 2025 | 25 Jan 2026 | 49 | 4 |
 Maximilian Beier | Muscle Stiffness | 24 Nov 2025 | 1 Dec 2025 | 7 | 2 |
| Ramy Bensebaini | Back Problems | 10 Nov 2025 | 23 Nov 2025 | 13 | 0 |
Unknown player | Muscular Problems | 3 Nov 2025 | 7 Nov 2025 | 4 | 1 |
| Nico Schlotterbeck | ILL | 30 Oct 2025 | 3 Nov 2025 | 4 | 1 |
Unknown player | Toe Injury | 29 Oct 2025 | 8 Dec 2025 | 40 | 7 |
| Ramy Bensebaini | Back Problems | 27 Oct 2025 | 30 Oct 2025 | 3 | 1 |
| Aarón Anselmino | Muscle Injury | 12 Sept 2025 | 19 Oct 2025 | 37 | 6 |
| Nico Schlotterbeck | Fitness | 10 Sept 2025 | 18 Sept 2025 | 8 | 2 |
Unknown player | Scaphoid Fracture | 1 Sept 2025 | 14 Sept 2025 | 13 | 0 |
 Silas Ostrzinski | ILL | 29 Aug 2025 | 3 Sept 2025 | 5 | 1 |
| Julian Ryerson | Knock | 17 Aug 2025 | 22 Aug 2025 | 5 | 1 |
Unknown player | Muscle Injury | 11 Aug 2025 | 22 Sept 2025 | 42 | 5 |
 Julien Duranville | Acromioclavicular Joint Dislocation | 6 Jul 2025 | 1 Nov 2025 | 118 | 15 |
| Emre Can | Adductor Pain | 1 Jul 2025 | — | — | 64 |
 Jamie Gittens | ILL | 24 Jun 2025 | 26 Jun 2025 | 2 | 0 |
| Emre Can | Adductor Pain | 10 Jun 2025 | 29 Oct 2025 | 141 | 3 |
Unknown player | Knee Injury | 4 Jun 2025 | 15 Jul 2025 | 41 | 3 |
| Filippo Mane | Hamstring Injury | 4 May 2025 | 9 Jun 2025 | 36 | 2 |
Unknown player | Head Injury | 26 Apr 2025 | 6 Jun 2025 | 41 | 4 |
| Maximilian Beier | Ankle Injury | 21 Apr 2025 | 5 Jun 2025 | 45 | 4 |
 Pascal Groß | Inner Ligament Injury | 20 Apr 2025 | 2 May 2025 | 12 | 2 |
| Carney Chukwuemeka | Minor Knock | 14 Apr 2025 | 18 Apr 2025 | 4 | 1 |
| Emre Can | Adductor Pain | 14 Apr 2025 | 18 Apr 2025 | 4 | 1 |
Unknown player | Cold | 10 Apr 2025 | 24 Apr 2025 | 14 | — |
Unknown player | Hamstring Injury | 9 Apr 2025 | 25 Aug 2025 | 138 | 7 |
| Nico Schlotterbeck | Meniscus Tear | 7 Apr 2025 | 9 Sept 2025 | 155 | 11 |
Unknown player | Bruise | 30 Mar 2025 | 7 Apr 2025 | 8 | 2 |
Unknown player | Foot Injury | 29 Mar 2025 | 3 Apr 2025 | 5 | 1 |
 Serhou Guirassy | Adductor Pain | 29 Mar 2025 | 31 Mar 2025 | 2 | 0 |
| Marcel Sabitzer | Knee Medial Ligament Tear | 16 Mar 2025 | 28 Apr 2025 | 43 | 7 |
Unknown player | Hamstring Injury | 10 Mar 2025 | 6 Apr 2025 | 27 | 3 |
 Daniel Svensson | Inner Knee Ligament Tear | 5 Mar 2025 | 26 Mar 2025 | 21 | 3 |
| Carney Chukwuemeka | Muscular Problems | 3 Mar 2025 | 10 Mar 2025 | 7 | 2 |
 Cole Campbell | Cruciate Ligament Injury | 2 Mar 2025 | 25 May 2025 | 84 | 4 |
| Julian Ryerson | Flu | 28 Feb 2025 | 3 Mar 2025 | 3 | 1 |
Unknown player | Shoulder Injury | 28 Feb 2025 | 23 Mar 2025 | 23 | 5 |
Unknown player | Muscle Stiffness | 21 Feb 2025 | 27 Feb 2025 | 6 | 1 |
| Carney Chukwuemeka | Knee Problems | 12 Feb 2025 | 16 Feb 2025 | 4 | 0 |
| Filippo Mane | Muscle Injury | 10 Feb 2025 | 14 Apr 2025 | 63 | 13 |
| Ramy Bensebaini | Muscle Stiffness | 10 Feb 2025 | 17 Feb 2025 | 7 | 2 |
Unknown player | Injury | 9 Feb 2025 | 8 Apr 2025 | 58 | — |
Unknown player | Muscle Injury | 9 Feb 2025 | 23 Mar 2025 | 42 | 7 |
| Carney Chukwuemeka | Knee Problems | 7 Feb 2025 | 10 Feb 2025 | 3 | 1 |
Unknown player | Knock | 31 Jan 2025 | 5 Feb 2025 | 5 | — |
| Felix Nmecha | Cruciate Ligament Injury | 25 Jan 2025 | 2 Apr 2025 | 67 | 14 |
| Karim Adeyemi | ILL | 13 Jan 2025 | 15 Jan 2025 | 2 | 0 |
| Emre Can | ILL | 9 Jan 2025 | 13 Jan 2025 | 4 | 1 |
| Nico Schlotterbeck | ILL | 9 Jan 2025 | 14 Jan 2025 | 5 | 1 |
| Alexander Meyer | ILL | 9 Jan 2025 | 13 Jan 2025 | 4 | 1 |
