| Player | Reason | From | Until | Days | Games missed |
|---|---|---|---|---|---|
 Mario Götze | ILL | 27 Feb 2017 | 6 Jul 2017 | 129 | 18 |
Unknown player | Infection | 16 Feb 2017 | 20 Feb 2017 | 4 | 1 |
Unknown player | Muscular Problems | 13 Feb 2017 | 23 Feb 2017 | 10 | 2 |
| Mario Götze | Muscular Problems | 13 Feb 2017 | 27 Feb 2017 | 14 | 3 |
Unknown player | Knee Problems | 9 Feb 2017 | 13 Feb 2017 | 4 | 1 |
Nuri Şahin | Fitness | 6 Feb 2017 | 13 Mar 2017 | 35 | 8 |
| Mario Götze | Adductor Pain | 6 Feb 2017 | 13 Feb 2017 | 7 | 2 |
Unknown player | ILL | 2 Feb 2017 | 6 Feb 2017 | 4 | 1 |
Unknown player | Groin Surgery | 2 Feb 2017 | 6 Apr 2017 | 63 | 13 |
Unknown player | Fitness | 16 Jan 2017 | 2 Feb 2017 | 17 | 3 |
Unknown player | Back Problems | 9 Jan 2017 | 30 Jan 2017 | 21 | 4 |
Unknown player | Fitness | 15 Dec 2016 | 2 Jan 2017 | 18 | 2 |
Unknown player | Back Problems | 15 Dec 2016 | 22 Dec 2016 | 7 | 2 |
Unknown player | Ankle Problems | 12 Dec 2016 | 22 Dec 2016 | 10 | 2 |
Unknown player | Knock | 12 Dec 2016 | 16 Jan 2017 | 35 | 4 |
Unknown player | Bruised Ribs | 12 Dec 2016 | 19 Dec 2016 | 7 | 1 |
| Mario Götze | Knee Problems | 5 Dec 2016 | 12 Dec 2016 | 7 | 2 |
Nuri Şahin | Knee Problems | 5 Dec 2016 | 6 Feb 2017 | 63 | 10 |
Unknown player | Back Problems | 1 Dec 2016 | 12 Dec 2016 | 11 | 3 |
 Mikel Merino | ILL | 28 Nov 2016 | 5 Dec 2016 | 7 | 1 |
Unknown player | Inflammation In The Ankle Joint | 24 Nov 2016 | 15 Dec 2016 | 21 | 4 |
Unknown player | Infection | 21 Nov 2016 | 24 Nov 2016 | 3 | 1 |
Unknown player | Metacarpal Fracture | 21 Nov 2016 | 23 Jan 2017 | 63 | 11 |
Unknown player | Rest | 21 Nov 2016 | 24 Nov 2016 | 3 | 1 |
Unknown player | Heel Injury | 17 Nov 2016 | 21 Nov 2016 | 4 | 1 |
Unknown player | Muscle Injury | 17 Nov 2016 | 12 Dec 2016 | 25 | 6 |
Unknown player | Appendectomy | 7 Nov 2016 | 21 Nov 2016 | 14 | 1 |
Unknown player | Fitness | 3 Nov 2016 | 17 Nov 2016 | 14 | 1 |
Nuri Şahin | Abdominal Influenza | 3 Nov 2016 | 7 Nov 2016 | 4 | 1 |
Unknown player | Ankle Injury | 31 Oct 2016 | 3 Nov 2016 | 3 | 0 |
Unknown player | Muscular Problems | 27 Oct 2016 | 31 Oct 2016 | 4 | 1 |
 Christian Pulisic | ILL | 24 Oct 2016 | 27 Oct 2016 | 3 | 1 |
 Marc Bartra | Adductor Pain | 24 Oct 2016 | 27 Oct 2016 | 3 | 0 |
Nuri Şahin | Cervical Spine Injury | 20 Oct 2016 | 24 Oct 2016 | 4 | 1 |
Unknown player | Torn Muscle Fiber In The Adductor Area | 17 Oct 2016 | 7 Nov 2016 | 21 | 6 |
Unknown player | Muscular Problems | 10 Oct 2016 | 24 Oct 2016 | 14 | 3 |
Unknown player | Torn Muscle Fiber | 10 Oct 2016 | 27 Oct 2016 | 17 | 4 |
Unknown player | Torn Muscle Fiber In The Adductor Area | 3 Oct 2016 | 20 Oct 2016 | 17 | 2 |
Unknown player | Adductor Pain | 29 Sept 2016 | 20 Oct 2016 | 21 | 3 |
| Marc Bartra | Adductor Injury | 22 Sept 2016 | 10 Oct 2016 | 18 | 3 |
Unknown player | Ankle Sprain | 8 Sept 2016 | 12 Sept 2016 | 4 | 1 |
| Mikel Merino | Inflammation In The Knee | 5 Sept 2016 | 12 Sept 2016 | 7 | 1 |
 Matthias Ginter | Rest | 25 Aug 2016 | 29 Aug 2016 | 4 | 1 |
Unknown player | Knee Surgery | 18 Aug 2016 | 3 Nov 2016 | 77 | 16 |
| Mario Götze | Muscle Stiffness | 18 Aug 2016 | 29 Aug 2016 | 11 | 3 |
Unknown player | Inflammation Of Pubic Bone | 23 May 2016 | 15 Nov 2016 | 176 | 27 |
Unknown player | Dislocation Of The Kneecap | 2 May 2016 | 12 Sept 2016 | 133 | 17 |
| Matthias Ginter | Rest | 28 Apr 2016 | 2 May 2016 | 4 | 1 |
Unknown player | Rest | 28 Apr 2016 | 2 May 2016 | 4 | 1 |
Unknown player | Stress Reaction Of The Bone | 21 Apr 2016 | 18 Jul 2016 | 88 | 9 |
Unknown player | Rest | 14 Apr 2016 | 18 Apr 2016 | 4 | 2 |
Unknown player | Knee Problems | 11 Apr 2016 | 18 Apr 2016 | 7 | 2 |
Unknown player | Rest | 7 Apr 2016 | 11 Apr 2016 | 4 | 2 |
Unknown player | Rest | 7 Apr 2016 | 11 Apr 2016 | 4 | 1 |
Unknown player | Rest | 31 Mar 2016 | 4 Apr 2016 | 4 | 1 |
Unknown player | Stomach Flu | 31 Mar 2016 | 4 Apr 2016 | 4 | 1 |
Unknown player | Rest | 17 Mar 2016 | 21 Mar 2016 | 4 | 2 |
Unknown player | Foot Bruise | 10 Mar 2016 | 7 Apr 2016 | 28 | 5 |
Unknown player | Cold | 29 Feb 2016 | 3 Mar 2016 | 3 | 1 |
Unknown player | Rest | 29 Feb 2016 | 3 Mar 2016 | 3 | 1 |
Unknown player | Hip Problems | 25 Feb 2016 | 29 Feb 2016 | 4 | 2 |
Unknown player | Torn Muscle Fiber In The Adductor Area | 22 Feb 2016 | 10 Mar 2016 | 17 | 4 |
Unknown player | Flu | 15 Feb 2016 | 22 Feb 2016 | 7 | 1 |
Unknown player | Infection | 25 Jan 2016 | 1 Feb 2016 | 7 | 1 |
Unknown player | Infection | 25 Jan 2016 | 1 Feb 2016 | 7 | 1 |
Unknown player | Muscular Problems | 11 Jan 2016 | 25 Jan 2016 | 14 | 5 |
Unknown player | Adductor Pain | 14 Dec 2015 | 21 Dec 2015 | 7 | 2 |
Unknown player | Infection | 3 Dec 2015 | 7 Dec 2015 | 4 | 1 |
Unknown player | Infection | 3 Dec 2015 | 7 Dec 2015 | 4 | 1 |
Unknown player | Infection | 3 Dec 2015 | 7 Dec 2015 | 4 | 1 |
Unknown player | Muscular Problems | 19 Nov 2015 | 30 Nov 2015 | 11 | 2 |
Nuri Şahin | Fitness | 16 Nov 2015 | 15 Feb 2016 | 91 | 17 |
Unknown player | Fitness | 12 Nov 2015 | 21 Dec 2015 | 39 | 8 |
Unknown player | Torn Muscle Fiber In The Adductor Area | 5 Nov 2015 | 16 Nov 2015 | 11 | 2 |
Unknown player | Muscular Problems | 26 Oct 2015 | 29 Oct 2015 | 3 | 1 |
 Henrikh Mkhitaryan | Muscle Stiffness | 22 Oct 2015 | 26 Oct 2015 | 4 | 1 |
Unknown player | Hamstring Strain | 1 Oct 2015 | 19 Oct 2015 | 18 | 4 |
Unknown player | Cold | 10 Sept 2015 | 14 Sept 2015 | 4 | 1 |
Unknown player | Knee Surgery | 10 Sept 2015 | 12 Nov 2015 | 63 | 15 |
Unknown player | Toe Injury | 31 Aug 2015 | 17 Sept 2015 | 17 | 2 |
Unknown player | Ankle Problems | 20 Aug 2015 | 24 Aug 2015 | 4 | 2 |
Unknown player | Ankle Injury | 6 Aug 2015 | 10 Aug 2015 | 4 | 2 |
Unknown player | Knee Problems | 27 Jul 2015 | 10 Sept 2015 | 45 | 9 |
Unknown player | Fitness | 13 Jul 2015 | 31 Aug 2015 | 49 | 8 |
Unknown player | Foot Bruise | 14 May 2015 | 18 May 2015 | 4 | 1 |
Unknown player | Torn Muscle Fiber In The Adductor Area | 4 May 2015 | 25 May 2015 | 21 | 3 |
Unknown player | Muscular Problems | 30 Apr 2015 | 14 May 2015 | 14 | 2 |
Unknown player | Ankle Injury | 30 Apr 2015 | 30 Jul 2015 | 91 | 5 |
Unknown player | Knee Problems | 27 Apr 2015 | 30 Apr 2015 | 3 | 1 |
Unknown player | ILL | 23 Apr 2015 | 27 Apr 2015 | 4 | 1 |
Unknown player | Fitness | 23 Apr 2015 | 1 May 2015 | 8 | 2 |
Unknown player | Flu | 9 Apr 2015 | 13 Apr 2015 | 4 | 1 |
Unknown player | Adductor Pain | 9 Apr 2015 | 13 Apr 2015 | 4 | 1 |
Unknown player | Adductor Pain | 6 Apr 2015 | 20 Apr 2015 | 14 | 3 |
Unknown player | Thigh Problems | 6 Apr 2015 | 9 Apr 2015 | 3 | 1 |
Unknown player | Inner Ligament Stretch Of The Knee | 2 Apr 2015 | 6 Apr 2015 | 4 | 1 |
Unknown player | Torn Muscle Fiber | 19 Mar 2015 | 2 Apr 2015 | 14 | 1 |
Unknown player | Fitness | 16 Mar 2015 | 6 Apr 2015 | 21 | 3 |
| Matthias Ginter | Injury | 9 Mar 2015 | 16 Mar 2015 | 7 | 1 |
Nuri Şahin | Tendon Irritation | 2 Mar 2015 | 16 Nov 2015 | 259 | 10 |
