| Player | Reason | From | Until | Days | Games missed |
|---|---|---|---|---|---|
 Serhou Guirassy | Infection | 20 Nov 2024 | 24 Nov 2024 | 4 | 0 |
 Unknown player | Muscle Injury | 1 Nov 2024 | 28 Nov 2024 | 27 | 4 |
 Gregor Kobel | Hip Problems | 30 Oct 2024 | 11 Nov 2024 | 12 | 3 |
 Julian Ryerson | Adductor Pain | 26 Oct 2024 | 8 Nov 2024 | 13 | 4 |
 Waldemar Anton | Thigh Problems | 26 Oct 2024 | 20 Nov 2024 | 25 | 5 |
 Unknown player | Ankle Problems | 23 Oct 2024 | 28 Nov 2024 | 36 | 6 |
 Yan Couto | Muscle Injury | 16 Oct 2024 | 8 Nov 2024 | 23 | 6 |
| Unknown player | Stomach Flu | 13 Oct 2024 | 19 Oct 2024 | 6 | 0 |
 Karim Adeyemi | Torn Muscle Fiber | 2 Oct 2024 | 9 Dec 2024 | 68 | 8 |
 Julien Duranville | Hamstring Injury | 2 Oct 2024 | 20 Nov 2024 | 49 | 8 |
 Donyell Malen | Fever | 29 Sept 2024 | 3 Oct 2024 | 4 | 1 |
 Marcel Sabitzer | Knock | 26 Sept 2024 | 29 Sept 2024 | 3 | 1 |
 Unknown player | Broken Nose Bone | 22 Sept 2024 | 30 Sept 2024 | 8 | 2 |
 Filippo Mane | Muscle Injury | 12 Sept 2024 | 15 Oct 2024 | 33 | 5 |
 Cole Campbell | Injury | 12 Sept 2024 | 15 Sept 2024 | 3 | 1 |
 Giovanni Reyna | Groin Injury | 5 Sept 2024 | 20 Nov 2024 | 76 | 13 |
| Yan Couto | Knock | 29 Aug 2024 | 12 Sept 2024 | 14 | 1 |
| Serhou Guirassy | Knee Injury | 10 Jul 2024 | 11 Sept 2024 | 63 | 8 |
 Ramy Bensebaini | Fitness | 1 Jun 2024 | 30 Jun 2024 | 29 | 1 |
| Karim Adeyemi | Rest | 10 May 2024 | 12 May 2024 | 2 | 0 |
 Unknown player | Rest | 10 May 2024 | 12 May 2024 | 2 | 0 |
| Gregor Kobel | Rest | 10 May 2024 | 12 May 2024 | 2 | 0 |
| Marcel Sabitzer | Rest | 10 May 2024 | 12 May 2024 | 2 | 0 |
 Niclas Füllkrug | Rest | 10 May 2024 | 12 May 2024 | 2 | 0 |
 Unknown player | Cold | 9 May 2024 | 2 Jun 2024 | 24 | 2 |
 Unknown player | Ankle Injury | 8 May 2024 | 12 May 2024 | 4 | 0 |
| Julian Ryerson | Rest | 3 May 2024 | 5 May 2024 | 2 | 0 |
| Unknown player | Rest | 3 May 2024 | 5 May 2024 | 2 | 0 |
 Ian Maatsen | Rest | 3 May 2024 | 5 May 2024 | 2 | 0 |
| Unknown player | Ankle Injury | 2 May 2024 | 6 May 2024 | 4 | 1 |
| Julien Duranville | Muscle Injury | 26 Apr 2024 | 30 Jun 2024 | 65 | 7 |
| Donyell Malen | Knee Problems | 14 Apr 2024 | 29 Apr 2024 | 15 | 3 |
| Unknown player | Ankle Injury | 14 Apr 2024 | 29 Apr 2024 | 15 | 3 |
 Unknown player | ILL | 12 Apr 2024 | 14 Apr 2024 | 2 | 0 |
| Gregor Kobel | Stomach Flu | 27 Mar 2024 | 1 Apr 2024 | 5 | 1 |
| Donyell Malen | Thigh Problems | 26 Mar 2024 | 11 Apr 2024 | 16 | 2 |
| Ramy Bensebaini | Inner Ligament Injury | 23 Mar 2024 | 31 May 2024 | 69 | 12 |
| Gregor Kobel | Minor Knock | 16 Mar 2024 | 20 Mar 2024 | 4 | 1 |
| Julian Ryerson | Inflammation | 12 Mar 2024 | 22 Mar 2024 | 10 | 2 |
 Unknown player | Muscular Problems | 2 Mar 2024 | 10 Mar 2024 | 8 | 1 |
 Felix Nmecha | Fitness | 28 Feb 2024 | 6 Mar 2024 | 7 | 1 |
 Unknown player | Injury | 23 Feb 2024 | 10 Mar 2024 | 16 | 2 |
| Unknown player | ILL | 20 Feb 2024 | 27 Feb 2024 | 7 | 2 |
| Gregor Kobel | Muscular Problems | 20 Feb 2024 | 6 Mar 2024 | 15 | 3 |
| Karim Adeyemi | Muscular Problems | 13 Feb 2024 | 21 Feb 2024 | 8 | 1 |
| Unknown player | Ankle Injury | 12 Feb 2024 | 27 Mar 2024 | 44 | 7 |
 Unknown player | Fever | 8 Feb 2024 | 12 Feb 2024 | 4 | 1 |
| Julien Duranville | Fitness | 5 Feb 2024 | 19 Feb 2024 | 14 | 2 |
| Unknown player | Muscular Problems | 31 Jan 2024 | 4 Feb 2024 | 4 | 1 |
 Unknown player | ILL | 26 Jan 2024 | 4 Feb 2024 | 9 | 2 |
| Ramy Bensebaini | Hip Problems | 25 Jan 2024 | 29 Jan 2024 | 4 | 0 |
 Unknown player | ILL | 25 Jan 2024 | 4 Feb 2024 | 10 | 2 |
| Gregor Kobel | ILL | 23 Jan 2024 | 4 Feb 2024 | 12 | 2 |
 Emre Can | Knock | 19 Jan 2024 | 25 Jan 2024 | 6 | 1 |
 Unknown player | Muscular Problems | 19 Jan 2024 | 7 Feb 2024 | 19 | 4 |
| Unknown player | Infection | 12 Jan 2024 | 22 Jan 2024 | 10 | 2 |
 Unknown player | Knee Injury | 7 Jan 2024 | 10 Mar 2024 | 63 | 10 |
| Unknown player | Ankle Injury | 20 Dec 2023 | 23 Jan 2024 | 34 | 2 |
 Unknown player | Torn Muscle Fiber | 17 Dec 2023 | 10 Feb 2024 | 55 | 6 |
| Karim Adeyemi | Syndesmosis Ligament Tear | 14 Dec 2023 | 4 Feb 2024 | 52 | 7 |
| Marcel Sabitzer | Calf Problems | 7 Dec 2023 | 10 Dec 2023 | 3 | 0 |
 Unknown player | Hamstring Injury | 7 Dec 2023 | 31 Dec 2023 | 24 | 4 |
 Marius Wolf | Ligament Stretching | 7 Dec 2023 | 10 Dec 2023 | 3 | 0 |
| Julian Ryerson | Inner Ligament Injury | 7 Dec 2023 | 4 Feb 2024 | 59 | 9 |
| Unknown player | Inner Ligament Stretch Of The Knee | 5 Dec 2023 | 11 Dec 2023 | 6 | 2 |
| Giovanni Reyna | ILL | 5 Dec 2023 | 7 Dec 2023 | 2 | 0 |
| Ramy Bensebaini | ILL | 1 Dec 2023 | 4 Dec 2023 | 3 | 0 |
| Unknown player | ILL | 27 Nov 2023 | 7 Dec 2023 | 10 | 2 |
| Unknown player | ILL | 24 Nov 2023 | 26 Nov 2023 | 2 | 0 |
| Karim Adeyemi | ILL | 24 Nov 2023 | 26 Nov 2023 | 2 | 0 |
| Felix Nmecha | Hip Problems | 13 Nov 2023 | 27 Feb 2024 | 106 | 8 |
| Unknown player | Injury | 3 Nov 2023 | 13 Nov 2023 | 10 | 2 |
| Felix Nmecha | Muscular Problems | 28 Oct 2023 | 30 Oct 2023 | 2 | 0 |
| Emre Can | Bruise | 26 Oct 2023 | 23 Nov 2023 | 28 | 5 |
| Julian Ryerson | ILL | 23 Oct 2023 | 26 Oct 2023 | 3 | 0 |
| Unknown player | Muscular Problems | 23 Oct 2023 | 26 Oct 2023 | 3 | 0 |
| Unknown player | Hamstring Strain | 15 Oct 2023 | 23 Oct 2023 | 8 | 1 |
| Unknown player | Hamstring Injury | 2 Oct 2023 | 9 Oct 2023 | 7 | 2 |
| Unknown player | Knee Injury | 28 Sept 2023 | 16 Oct 2023 | 18 | 3 |
| Julien Duranville | Muscle Injury | 24 Sept 2023 | 4 Feb 2024 | 133 | 23 |
| Marcel Sabitzer | Adductor Pain | 20 Sept 2023 | 12 Oct 2023 | 22 | 4 |
| Julien Duranville | Fitness | 18 Sept 2023 | 23 Sept 2023 | 5 | 1 |
| Unknown player | Knee Injury | 9 Sept 2023 | 24 Nov 2023 | 76 | 13 |
| Julian Ryerson | Ankle Problems | 21 Aug 2023 | 30 Aug 2023 | 9 | 1 |
| Felix Nmecha | Ankle Problems | 9 Aug 2023 | 18 Aug 2023 | 9 | 1 |
 Thomas Meunier | Muscle Injury | 31 Jul 2023 | 27 Oct 2023 | 88 | 14 |
| Julien Duranville | Torn Muscle Fiber | 28 Jul 2023 | 17 Sept 2023 | 51 | 8 |
| Unknown player | Adductor Pain | 1 Jul 2023 | 27 Aug 2023 | 57 | 7 |
| Giovanni Reyna | Fissure Of The Fibula | 20 Jun 2023 | 17 Sept 2023 | 89 | 11 |
 Jude Bellingham | Knee Injury | 20 May 2023 | 22 May 2023 | 2 | 0 |
 Jamie Gittens | Shoulder Injury | 7 May 2023 | 18 Aug 2023 | 103 | 12 |
| Unknown player | Knee Injury | 30 Apr 2023 | 19 Jun 2023 | 50 | 4 |
 Nico Schlotterbeck | Hamstring Injury | 23 Apr 2023 | 5 May 2023 | 12 | 1 |
 Unknown player | Knee Injury | 21 Apr 2023 | 4 May 2023 | 13 | 2 |
| Thomas Meunier | Muscle Injury | 16 Apr 2023 | 29 May 2023 | 43 | 6 |
| Marius Wolf | ILL | 7 Apr 2023 | 12 Apr 2023 | 5 | 1 |
| Unknown player | Knee Problems | 2 Apr 2023 | 7 Apr 2023 | 5 | 1 |
| Nico Schlotterbeck | Torn Muscle Fiber | 2 Apr 2023 | 20 Apr 2023 | 18 | 3 |
 Unknown player | ILL | 31 Mar 2023 | 9 Apr 2023 | 9 | 1 |
| Thomas Meunier | Back Problems | 29 Mar 2023 | 6 Apr 2023 | 8 | 1 |
