| Player | Reason | From | Until | Days | Games missed |
|---|---|---|---|---|---|
 Filipe Luís | Muscle Injury | 3 Aug 2017 | 24 Aug 2017 | 21 | 4 |
 Unknown player | Groin Injury | 18 Jul 2017 | 25 Aug 2017 | 38 | 7 |
 José María Giménez | Adductor Injury | 1 May 2017 | 8 May 2017 | 7 | 2 |
 Unknown player | Shoulder Injury | 27 Apr 2017 | 1 May 2017 | 4 | 1 |
| Unknown player | Hamstring Injury | 29 Mar 2017 | 17 Apr 2017 | 19 | 5 |
 Unknown player | Foot Injury | 28 Mar 2017 | 10 Apr 2017 | 13 | 3 |
 Unknown player | Knee Injury | 20 Mar 2017 | 20 Jul 2017 | 122 | 14 |
| Unknown player | Muscular Problems | 6 Mar 2017 | 18 Mar 2017 | 12 | 2 |
 Unknown player | Groin Injury | 8 Feb 2017 | 25 Feb 2017 | 17 | 3 |
| José María Giménez | Adductor Injury | 30 Jan 2017 | 9 Feb 2017 | 10 | 3 |
 Unknown player | Shoulder Injury | 17 Jan 2017 | 17 May 2017 | 120 | — |
 Lucas Hernández | Muscle Injury | 12 Jan 2017 | 19 Jan 2017 | 7 | 1 |
| Unknown player | Flu | 8 Jan 2017 | 14 Jan 2017 | 6 | 1 |
| Unknown player | Foot Bruise | 2 Jan 2017 | 12 Jan 2017 | 10 | 3 |
 Jan Oblak | Shoulder Injury | 15 Dec 2016 | 20 Feb 2017 | 67 | 16 |
| Filipe Luís | Muscle Injury | 5 Dec 2016 | 2 Jan 2017 | 28 | 5 |
| Jan Oblak | Rest | 28 Nov 2016 | 1 Dec 2016 | 3 | 0 |
| Filipe Luís | Hamstring Injury | 24 Nov 2016 | 1 Dec 2016 | 7 | 1 |
 Unknown player | Knee Problems | 2 Nov 2016 | 9 Nov 2016 | 7 | 1 |
| Unknown player | Hip Injury | 30 Oct 2016 | 17 Nov 2016 | 18 | 2 |
| Unknown player | Ankle Sprain | 29 Sept 2016 | 4 Oct 2016 | 5 | 1 |
| José María Giménez | Adductor Injury | 26 Sept 2016 | 27 Oct 2016 | 31 | 5 |
 Unknown player | Ankle Injury | 18 Aug 2016 | 5 Sept 2016 | 18 | 2 |
| Unknown player | Ankle Injury | 25 Apr 2016 | 2 May 2016 | 7 | 2 |
| Unknown player | Hamstring Injury | 21 Apr 2016 | 2 May 2016 | 11 | 3 |
 Unknown player | Adductor Pain | 17 Apr 2016 | 27 Apr 2016 | 10 | 3 |
 Unknown player | Toe Injury | 31 Mar 2016 | 13 Apr 2016 | 13 | 3 |
| Unknown player | Ankle Injury | 28 Mar 2016 | 4 Apr 2016 | 7 | 1 |
| José María Giménez | Achilles Tendon Problems | 21 Mar 2016 | 21 Apr 2016 | 31 | 6 |
| Unknown player | Hamstring Injury | 17 Mar 2016 | 4 Apr 2016 | 18 | 2 |
| Unknown player | Adductor Pain | 14 Mar 2016 | 15 Apr 2016 | 32 | 6 |
| Unknown player | Stomach Flu | 3 Mar 2016 | 7 Mar 2016 | 4 | 1 |
| Unknown player | Hamstring Injury | 25 Feb 2016 | 28 Mar 2016 | 32 | 6 |
| Unknown player | Ankle Injury | 15 Feb 2016 | 3 Mar 2016 | 17 | 4 |
 Unknown player | Hamstring Injury | 8 Feb 2016 | 7 Mar 2016 | 28 | 5 |
| Unknown player | Knee Injury | 1 Feb 2016 | 11 Feb 2016 | 10 | 1 |
| Unknown player | Hamstring Strain | 1 Feb 2016 | 18 Feb 2016 | 17 | 2 |
| José María Giménez | Muscle Injury | 5 Nov 2015 | 19 Nov 2015 | 14 | 1 |
 Unknown player | Minor Knock | 2 Nov 2015 | 5 Nov 2015 | 3 | 1 |
 Unknown player | Stomach Problems | 7 Oct 2015 | 17 Nov 2015 | 41 | 6 |
 Koke | Hamstring Strain | 21 Sept 2015 | 15 Oct 2015 | 24 | 4 |
 Unknown player | Elbow Injury | 19 Mar 2015 | 13 Apr 2015 | 25 | 4 |
 Unknown player | ILL | 26 Feb 2015 | 1 Apr 2015 | 34 | 5 |
| Koke | Muscle Tear | 9 Feb 2015 | 5 Mar 2015 | 24 | 4 |
| Koke | Muscular Problems | 26 Jan 2015 | 2 Feb 2015 | 7 | 2 |
 Unknown player | Muscle Injury | 21 Dec 2014 | 9 Jan 2015 | 19 | 3 |
 Unknown player | Knee Injury | 4 Dec 2014 | 9 Feb 2015 | 67 | 15 |
| Unknown player | Muscle Injury | 18 Nov 2014 | 9 Dec 2014 | 21 | 5 |
 Unknown player | Thigh Problems | 8 May 2014 | 15 May 2014 | 7 | 1 |
| Unknown player | Muscle Injury | 2 Apr 2014 | 12 Apr 2014 | 10 | 2 |
 Unknown player | Vertebral Injury | 13 Feb 2014 | 8 Apr 2014 | 54 | 12 |
| José María Giménez | Calf Injury | 6 Feb 2014 | 27 Feb 2014 | 21 | 5 |
 Thibaut Courtois | Back Problems | 6 Feb 2014 | 13 Feb 2014 | 7 | 2 |
| Filipe Luís | Hamstring Strain | 30 Jan 2014 | 20 Feb 2014 | 21 | 5 |
 Unknown player | Broken Collarbone | 27 Jan 2014 | 3 Apr 2014 | 66 | — |
 Unknown player | Injury | 1 Nov 2013 | 27 Jan 2014 | 87 | 17 |
| Unknown player | Inner Ligament Stretch Of The Knee | 24 Sept 2013 | 3 Oct 2013 | 9 | 3 |
 Unknown player | Torn Muscle Fiber | 20 Feb 2012 | 19 Mar 2012 | 28 | 6 |
| Unknown player | Cruciate Ligament Tear | 28 Jul 2011 | 2 Feb 2012 | 189 | 34 |
 Unknown player | Flu | 1 Apr 2011 | 5 Apr 2011 | 4 | 1 |
| Unknown player | Muscle Tear | 14 Jan 2011 | 27 Jan 2011 | 13 | 3 |
| Unknown player | Appendicitis | 28 Oct 2010 | 18 Nov 2010 | 21 | 5 |
| Unknown player | Muscle Tear | 1 Oct 2010 | 19 Oct 2010 | 18 | 2 |
| Unknown player | Knee Problems | 27 Sept 2010 | 12 Oct 2010 | 15 | 2 |
| Unknown player | Knock | 20 Sept 2010 | 25 Sept 2010 | 5 | 1 |
| Unknown player | Knock | 11 Sept 2010 | 18 Sept 2010 | 7 | 2 |
 Unknown player | Muscle Fiber Tear | 30 Aug 2010 | 14 Sept 2010 | 15 | 2 |
 Unknown player | Cruciate Ligament Tear | 10 May 2010 | 11 Nov 2010 | 185 | 19 |
 Unknown player | Torn Muscle Fiber | 30 Sept 2009 | 25 Oct 2009 | 25 | 4 |
| Unknown player | Broken Toe | 31 Aug 2009 | 1 Oct 2009 | 31 | 5 |
 Unknown player | Adductor Injury | 10 Jan 2008 | 10 Feb 2008 | 31 | 8 |
 Unknown player | Cruciate Ligament Tear | 11 Oct 2006 | 30 Apr 2007 | 201 | 31 |
 Unknown player | Shoulder Injury | 3 Dec 2001 | 24 Dec 2001 | 21 | 0 |
| Unknown player | Ankle Fracture | 22 Feb 1999 | 30 Jul 1999 | 158 | 0 |
