| Player | Reason | From | Until | Days | Games missed |
|---|---|---|---|---|---|
 Dayot Upamecano | Knee Injury | 1 Aug 2019 | 26 Aug 2019 | 25 | 3 |
Unknown player | Broken Leg | 17 Jun 2019 | 4 Nov 2019 | 140 | 26 |
 Tyler Adams | Adductor Pain | 12 Jun 2019 | 11 Sept 2019 | 91 | 8 |
Unknown player | Thigh Problems | 22 Apr 2019 | 29 Apr 2019 | 7 | 2 |
 Emile Smith Rowe | Adductor Pain | 22 Apr 2019 | 13 May 2019 | 21 | 4 |
 Yvon Mvogo | Internal Ligament Strain | 7 Apr 2019 | 13 May 2019 | 36 | 6 |
 Yussuf Poulsen | Angina | 4 Apr 2019 | 15 Apr 2019 | 11 | 2 |
| Tyler Adams | Adductor Pain | 1 Apr 2019 | 12 May 2019 | 41 | 7 |
 Lukas Klostermann | Torn Muscle Fiber In The Adductor Area | 21 Mar 2019 | 4 Apr 2019 | 14 | 3 |
Unknown player | Capsule Rupture | 12 Mar 2019 | 22 Apr 2019 | 41 | 7 |
| Yussuf Poulsen | Calf Problems | 7 Mar 2019 | 18 Mar 2019 | 11 | 2 |
Unknown player | Dental Surgery | 1 Mar 2019 | 1 Apr 2019 | 31 | 5 |
Unknown player | ILL | 21 Feb 2019 | 4 Mar 2019 | 11 | 2 |
Unknown player | Ankle Problems | 5 Feb 2019 | 20 Feb 2019 | 15 | 3 |
Unknown player | Flu | 29 Jan 2019 | 4 Feb 2019 | 6 | 1 |
Unknown player | Flu | 28 Jan 2019 | 7 Feb 2019 | 10 | 1 |
| Dayot Upamecano | Knee Injury | 23 Jan 2019 | 13 May 2019 | 110 | 19 |
Unknown player | Fitness | 15 Jan 2019 | 25 Jan 2019 | 10 | 1 |
Unknown player | Ankle Injury | 13 Jan 2019 | 1 Feb 2019 | 19 | 3 |
Unknown player | Broken Toe | 23 Dec 2018 | 28 Jan 2019 | 36 | 3 |
Unknown player | Muscular Problems | 6 Dec 2018 | 12 Dec 2018 | 6 | 1 |
 Amadou Haidara | Cruciate Ligament Injury | 22 Nov 2018 | 28 Feb 2019 | 98 | 16 |
| Dayot Upamecano | Muscular Problems | 12 Nov 2018 | 27 Nov 2018 | 15 | 1 |
 Marcel Sabitzer | Muscle Injury | 12 Nov 2018 | 1 Dec 2018 | 19 | 2 |
Unknown player | Hamstring Injury | 9 Nov 2018 | 21 Nov 2018 | 12 | 1 |
| Yussuf Poulsen | Back Problems | 8 Nov 2018 | 12 Nov 2018 | 4 | 2 |
Unknown player | Groin Problems | 19 Oct 2018 | 15 Jan 2019 | 88 | 17 |
Unknown player | Rest | 19 Oct 2018 | 21 Oct 2018 | 2 | 0 |
Unknown player | Adductor Pain | 2 Oct 2018 | 6 Oct 2018 | 4 | 1 |
Unknown player | Cold | 1 Oct 2018 | 6 Oct 2018 | 5 | 1 |
Unknown player | Muscular Problems | 24 Sept 2018 | 27 Sept 2018 | 3 | 0 |
| Lukas Klostermann | Knee Problems | 17 Sept 2018 | 1 Oct 2018 | 14 | 4 |
Unknown player | Knee Problems | 17 Sept 2018 | 24 Sept 2018 | 7 | 1 |
Unknown player | Muscular Problems | 17 Sept 2018 | 21 Sept 2018 | 4 | 0 |
Unknown player | Stomach Flu | 16 Aug 2018 | 23 Aug 2018 | 7 | 2 |
| Dayot Upamecano | Bruised Knee | 24 Jul 2018 | 16 Aug 2018 | 23 | 5 |
Unknown player | Fitness | 21 May 2018 | 1 Jan 2019 | 225 | 36 |
| Dayot Upamecano | Strain In The Thigh And Gluteal Muscles | 13 Apr 2018 | 20 Apr 2018 | 7 | 1 |
| Marcel Sabitzer | Shoulder Injury | 12 Apr 2018 | 16 Jul 2018 | 95 | 6 |
 Konrad Laimer | Muscle Tear | 5 Apr 2018 | 30 Apr 2018 | 25 | 5 |
Unknown player | Knee Problems | 26 Mar 2018 | 7 Apr 2018 | 12 | 2 |
Unknown player | Knee Problems | 8 Mar 2018 | 12 Mar 2018 | 4 | 1 |
| Konrad Laimer | Adductor Pain | 8 Mar 2018 | 12 Mar 2018 | 4 | 1 |
| Konrad Laimer | Minor Knock | 22 Feb 2018 | 1 Mar 2018 | 7 | 2 |
Unknown player | Hamstring Strain | 19 Feb 2018 | 1 Mar 2018 | 10 | 3 |
Unknown player | Cold | 8 Feb 2018 | 12 Feb 2018 | 4 | 1 |
| Marcel Sabitzer | Cold | 8 Feb 2018 | 12 Feb 2018 | 4 | 1 |
Unknown player | Fitness | 5 Feb 2018 | 12 Feb 2018 | 7 | 1 |
Unknown player | Cruciate Ligament Tear | 22 Jan 2018 | 27 Aug 2018 | 217 | 29 |
Unknown player | Broken Hand | 18 Dec 2017 | 22 Jan 2018 | 35 | 2 |
Unknown player | ILL | 11 Dec 2017 | 16 Dec 2017 | 5 | 1 |
 Bernardo | ILL | 11 Dec 2017 | 16 Dec 2017 | 5 | 1 |
Unknown player | Inflammation Of Pubic Bone | 4 Dec 2017 | 5 Feb 2018 | 63 | 8 |
| Dayot Upamecano | Torn Muscle Fiber | 4 Dec 2017 | 10 Dec 2017 | 6 | 1 |
| Marcel Sabitzer | Shoulder Injury | 23 Nov 2017 | 1 Jan 2018 | 39 | 6 |
Unknown player | Hamstring Strain | 2 Nov 2017 | 16 Nov 2017 | 14 | 1 |
Unknown player | Thigh Problems | 23 Oct 2017 | 26 Oct 2017 | 3 | 0 |
| Dayot Upamecano | Rest | 19 Oct 2017 | 23 Oct 2017 | 4 | 1 |
Unknown player | Toe Injury | 16 Oct 2017 | 27 Nov 2017 | 42 | 9 |
| Lukas Klostermann | Thigh Problems | 12 Oct 2017 | 16 Oct 2017 | 4 | 1 |
Unknown player | Cervical Spine Injury | 28 Sept 2017 | 9 Oct 2017 | 11 | 1 |
Unknown player | Torn Muscle Fiber | 20 Sept 2017 | 25 Sept 2017 | 5 | 1 |
| Dayot Upamecano | Rest | 18 Sept 2017 | 21 Sept 2017 | 3 | 1 |
Unknown player | Knock | 18 Sept 2017 | 25 Sept 2017 | 7 | 2 |
| Marcel Sabitzer | Minor Knock | 14 Sept 2017 | 18 Sept 2017 | 4 | 1 |
Unknown player | Cold | 7 Sept 2017 | 11 Sept 2017 | 4 | 1 |
| Yussuf Poulsen | Back Problems | 24 Aug 2017 | 31 Aug 2017 | 7 | 1 |
| Bernardo | Fitness | 14 Aug 2017 | 21 Aug 2017 | 7 | 1 |
Unknown player | Fitness | 14 Aug 2017 | 21 Aug 2017 | 7 | 1 |
Unknown player | Angina | 10 Aug 2017 | 17 Aug 2017 | 7 | 1 |
| Yvon Mvogo | Back Problems | 10 Aug 2017 | 14 Aug 2017 | 4 | 0 |
| Bernardo | Ankle Problems | 31 Jul 2017 | 14 Aug 2017 | 14 | 1 |
Unknown player | Knee Bruise | 24 Jul 2017 | 14 Aug 2017 | 21 | 2 |
 Willi Orbán | Ankle Problems | 4 May 2017 | 1 Jun 2017 | 28 | 3 |
Unknown player | Elbow Injury | 31 Mar 2017 | 14 Apr 2017 | 14 | 3 |
Unknown player | Torn Muscle Fiber | 23 Mar 2017 | 3 Apr 2017 | 11 | 1 |
Unknown player | Broken Fibula | 23 Mar 2017 | 30 Jun 2017 | 99 | — |
| Lukas Klostermann | Fitness | 23 Mar 2017 | 25 May 2017 | 63 | 9 |
Unknown player | Remove Screws/Nails | 10 Mar 2017 | 27 Apr 2017 | 48 | 7 |
 Oliver Burke | Thigh Problems | 23 Feb 2017 | 2 Mar 2017 | 7 | 1 |
| Yussuf Poulsen | Torn Muscle Bundle | 13 Feb 2017 | 27 Mar 2017 | 42 | 5 |
Unknown player | Flu | 2 Feb 2017 | 9 Feb 2017 | 7 | 1 |
| Marcel Sabitzer | Flu | 2 Feb 2017 | 9 Feb 2017 | 7 | 1 |
Unknown player | Flu | 30 Jan 2017 | 9 Feb 2017 | 10 | 1 |
| Oliver Burke | Flu | 26 Jan 2017 | 30 Jan 2017 | 4 | 1 |
Unknown player | Fitness | 5 Jan 2017 | 1 Feb 2017 | 27 | 4 |
Unknown player | Knee Surgery | 14 Nov 2016 | 2 Jan 2017 | 49 | 6 |
| Bernardo | Meniscus Damage | 31 Oct 2016 | 12 Dec 2016 | 42 | 5 |
| Marcel Sabitzer | Torn Lateral Ankle Ligament | 17 Oct 2016 | 27 Oct 2016 | 10 | 1 |
Unknown player | Ankle Injury | 26 Sept 2016 | 5 Jan 2017 | 101 | 12 |
Unknown player | Concussion | 22 Sept 2016 | 26 Sept 2016 | 4 | 0 |
Unknown player | Knee Problems | 22 Sept 2016 | 26 Sept 2016 | 4 | 0 |
| Lukas Klostermann | Cruciate Ligament Tear | 12 Sept 2016 | 23 Mar 2017 | 192 | 26 |
| Lukas Klostermann | Muscular Problems | 25 Aug 2016 | 1 Sept 2016 | 7 | 1 |
Unknown player | Metatarsal Bruise | 22 Aug 2016 | 1 Sept 2016 | 10 | 1 |
Unknown player | Muscle Injury | 16 Oct 2015 | 20 Dec 2015 | 65 | 9 |
Unknown player | Thigh Problems | 14 Sept 2015 | 15 Oct 2015 | 31 | 4 |
Unknown player | Patellar Tendon Problems | 10 Aug 2015 | 24 Oct 2015 | 75 | 10 |
 Rani Khedira | Inner Ankle Ligament Tear | 26 Feb 2015 | 23 Apr 2015 | 56 | 8 |
Unknown player | Torn Muscle Bundle | 13 Dec 2014 | 7 Feb 2015 | 56 | 3 |
